BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB007C09LP1|AL425669
(831 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1262 1417 0.0
>3x_Contig1262
Length = 7137
Score = 1417 bits (715), Expect = 0.0
Identities = 722/723 (99%), Gaps = 1/723 (0%)
Strand = Plus / Plus
Query: 110 ggaagaagatgcttgggacctagacc-aaaatgatttggaattagacgacgagttagaga 168
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 ggaagaagatgcttgggacctagacccaaaatgatttggaattagacgacgagttagaga 60
Query: 169 tcgaagaatccgaagtgactgaagaacaagtagatgaatcagaattgccaatgtgggtta 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcgaagaatccgaagtgactgaagaacaagtagatgaatcagaattgccaatgtgggtta 120
Query: 229 aaaattcaaagcttccagcagttctagtagccgctggagcctttgatgctgctgcccaag 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaattcaaagcttccagcagttctagtagccgctggagcctttgatgctgctgcccaag 180
Query: 289 ccttgaataagcaggtagccgttgtaaacttcgaacccctcaggacaccattcattgata 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccttgaataagcaggtagccgttgtaaacttcgaacccctcaggacaccattcattgata 240
Query: 349 tatacgatggtgcaagaacttatatgagtgctacaccaaatgaattaccttcaattattg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tatacgatggtgcaagaacttatatgagtgctacaccaaatgaattaccttcaattattg 300
Query: 409 gatacatccgagctgatgccgatgaggaggacaaatctaaaatactaccatttgttcctg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gatacatccgagctgatgccgatgaggaggacaaatctaaaatactaccatttgttcctg 360
Query: 469 gcgtttctgtagtcaccacgaagttgaacgagggattcaaagcatttaaggctaacaaat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcgtttctgtagtcaccacgaagttgaacgagggattcaaagcatttaaggctaacaaat 420
Query: 529 tggaagttgctatcgagcacttccgagacgttatctatgccatagctttgttagcagtta 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tggaagttgctatcgagcacttccgagacgttatctatgccatagctttgttagcagtta 480
Query: 589 ctgacaaagaagatgaaacaacagcacaaactgcacttgcaactgctcgtgaatacatct 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctgacaaagaagatgaaacaacagcacaaactgcacttgcaactgctcgtgaatacatct 540
Query: 649 taggtctttctatggagctagaacgtcgtgctctacctgccaatgacgttaagcgtaacc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 taggtctttctatggagctagaacgtcgtgctctacctgccaatgacgttaagcgtaacc 600
Query: 709 tggaattggcagcatacttcagcaggacaaaacttctacctgtgcatagaagtaatgctt 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tggaattggcagcatacttcagcaggacaaaacttctacctgtgcatagaagtaatgctt 660
Query: 769 tgaatgttgctatgacccaatcattcaaaaacaagaactttgtattagcatcctatttcg 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tgaatgttgctatgacccaatcattcaaaaacaagaactttgtattagcatcctatttcg 720
Query: 829 cag 831
|||
Sbjct: 721 cag 723
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6555
Number of Sequences: 1807
Number of extensions: 6555
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 831
length of database: 10,358,551
effective HSP length: 16
effective length of query: 815
effective length of database: 10,329,639
effective search space: 8418655785
effective search space used: 8418655785
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)